Microscope technique

Speeding identification of deadly bacteria

A new way of rapidly identifying bacteria, which requires a slight modification to a simple microscope, may change the way doctors approach treatment for patients who develop potentially deadly infections and may also help the food industry screen against contamination with harmful pathogens, according to researchers at the Korea Advanced Institute of Science and Technology (KAIST) in Daejeon, South Korea.

Holographic microscope coupled with machine-learning software, which could be...
Holographic microscope coupled with machine-learning software, which could be an inexpensive, point-of-care solution for hospitals and contamination screening of food industries worldwide, will be tested in Tanzania next month.
Source: Young-Ju Jo and YongKeun (Paul) Park, Korea Advanced Institute of Science and Technology

Described this week in The Optical Society (OSA) journal, Optics Express, the new approach involves bouncing laser light off individual bacteria under the microscope, creating holographic images of them, and then using a mathematical transformation and computer software to analyze the images and identify them by comparing them to other, known bacteria.

The software uses a machine-learning algorithm - the sort computers connected to security cameras might use for automated facial recognition.

If the approach proves to be effective in controlled clinical trials, it could lead to a powerful new way of routinely and almost immediately identifying dangerous bacteria at the bedside -- much faster than the days it normally takes to grow or "culture" the microbes in the laboratory from a patient's blood, which is still the gold standard in the health care industry for making a definitive diagnosis.

Also routinely used today is a newer method for rapidly identifying bacteria based on a DNA-analysis technique called quantitative polymerase chain reaction (qPCR), but it still may take hours to return a result, and it requires expensive sample preparation that is often cost prohibitive for routine use in rural or resource poor settings around the world.

The challenge of meeting clinical needs in the developing world was one of the motivations behind the work, according to the KAIST team. They wanted to find an inexpensive method that could surpass the speed of qPCR.

"Employing laser holographic techniques, we achieved rapid and label-free identification of bacterial species at the single bacterium level with a single-shot measurement," said physicist YongKeun Park, who led the KAIST team. "This means the present method can be utilized as a prescreening test for point-of-care bacterial diagnosis for various applications including medicine and food hygiene."

"We have also developed a compact portable device, so called quantitative phase imaging unit (QPIU), to convert an simple existing microscope to a holographic one, in order to measure light scattering patterns of individual bacteria, which can then be used to identify bacteria species for rural areas and developing countries," said Park. "Our team has plans to go to Tanzania next month for a field test."

Why Speed Matters in Infection Control

In hospitals and clinics worldwide, bacterial infections are a major source of illness, often slowing recovery or making matters much worse for people who are admitted to inpatient care for routine or emergency treatment. In the most severe cases, bacterial poisoning causes severe disease and syndromes like sepsis, meningitis, pneumonia, and gastroenteritis - all of which can be deadly unless the patient is given immediate and appropriate treatment.

The true challenge of fighting those infections is time. In order to best treat their patients, doctors would like to know exactly which bacteria they are infected with, but the lost hours or days spent identifying the exact pathogen can make the road to recovery that much steeper. Sepsis, for instance, can develop so rapidly that mortality has been seen to increase by 9 percent per hour until treatment is given. Waiting two days may kill the patient, Park added.

For that reason, many hospital-acquired infections are treated presumptively, before they are definitively identified, using broad-spectrum antibiotics. These powerful combinations of potent drugs are often effective, but using them routinely raises the risk of deadly multidrug-resistant bacteria emerging.

The new QPIU technology promises to deliver better point-of-care diagnostics by reducing the time it takes to specifically identify bacteria, which may guide treatment, allowing doctors to prescribe the best drugs available to treat an infection and improving outcomes for people with hospital-acquired infections -- though the effectiveness of the approach remains to be proven in future clinical trials.

Source: The Optical Society

09.06.2015

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